How to Get and Visualize the Chromosome Physical Position

Question

[Reza]

Dear all, I have multiple sequences and need to get (Start and End chromosomal positions) and visualize the chromosome physical position for them. Reference genome and annotation file (.gtf) are available. Could anyone help to solve this problem?

[Ram]

Why does this question have an R tag? Do you wish to use R to solve this problem?

Answer 1

[GenoMax]

Past useful threads:
Creating chromosome karyotype plot with R and ggplot2
Creating a karyotype plot with genes using karyoploteR