Question: What should you do if you don't know the wig file is based on GRCH37 or GRCH38?
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gravatar for Shicheng Guo
12 months ago by
Shicheng Guo7.7k
Shicheng Guo7.7k wrote:

One possible way is to change it to bigwig. chr9 in GRCH37 is shorter than GRCH38 while chr18 is longer than GRCH38. Usually it should work to identify the genomic reference version.

http://hgdownload-test.cse.ucsc.edu/goldenPath/hg38/bigZips/hg38.chrom.sizes

http://hgdownload-test.cse.ucsc.edu/goldenPath/hg19/bigZips/hg19.chrom.sizes

wig bedgraph • 230 views
ADD COMMENTlink modified 12 months ago • written 12 months ago by Shicheng Guo7.7k

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