Question: GSEA analysis and pathway mapping
0
gravatar for ps1212
12 months ago by
ps12120
India
ps12120 wrote:

Hi,

I have a set of DE genes from a GSEA. I would like to know how to map the genes to pathways in R? This is from Limma's pipeline output. I also have a set of normalized gene counts. How do I make sense of this table to map genes to specific pathways?

rna-seq R pathway • 402 views
ADD COMMENTlink written 12 months ago by ps12120

What do you mean by "map genes to specific pathways"?

ADD REPLYlink written 12 months ago by h.mon27k

Im trying to figure out which genes are part of a certain KEGG pathway.

ADD REPLYlink written 12 months ago by ps12120

Gene Set Clustering based on Functional annotation (GeneSCF)

ADD REPLYlink written 12 months ago by EagleEye6.4k
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