Question: GSEA analysis and pathway mapping
0
gravatar for ps1212
7 months ago by
ps12120
India
ps12120 wrote:

Hi,

I have a set of DE genes from a GSEA. I would like to know how to map the genes to pathways in R? This is from Limma's pipeline output. I also have a set of normalized gene counts. How do I make sense of this table to map genes to specific pathways?

rna-seq R pathway • 289 views
ADD COMMENTlink written 7 months ago by ps12120

What do you mean by "map genes to specific pathways"?

ADD REPLYlink written 7 months ago by h.mon24k

Im trying to figure out which genes are part of a certain KEGG pathway.

ADD REPLYlink written 7 months ago by ps12120

Gene Set Clustering based on Functional annotation (GeneSCF)

ADD REPLYlink written 7 months ago by EagleEye6.2k
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