I'm trying to annotate the .vcf output file with annotSV but I'm running into errors right from the start. I'm getting the error "'ANNOTSV' environment variable not specified. Please define it before running AnnotSV. Exit"
I'm running the command "$ANNOTSV/bin/AnnotSV -SVinputFile xhmm.vcf > AnnotSV.log"
Any help would be greatly appreciated.