What's the exact pathway to handle paired end fastq data so you finally make it into Genbank format?

Question

[berkecanerel]

I've unmapped cleaned paired end sequence data in fastq format of a bacterial genome. I want to get a sequence data in Genbank format in the end. What's the exact pathway that I have to follow in galaxy web server and if in some point necessary, also using linux based apps? I would appreciate if it would be a detailed exact pathway.

Answer 1

[GenoMax]

Since you asked about Galaxy here is a tutorial for genome assembly using Galaxy.

You are better off leaving the comfort of galaxy UI and descend to the command line right from get go. It may prove to be the best in long run. If you need a tutorial for command line then I recommend this one.