Question: how to get genomic position from protein pdb ID+AA residue position within the protein
0
gravatar for lait
2.3 years ago by
lait150
lait150 wrote:

Hi,

We sequence trios at our lab, and we would like to check if any of the variants lie within protein-protein interaction sites. I found this database called PiSite, a database for protein-protein interaction sites.

For such sites, I can get the AA residues position within a protein, in addition to the protein PDB ID.

With this information in hand, how is it possible to get the genomic position of those specific AA residues ? anyone aware of programming libraries that can help in this case?

The solution I came up with is to download multiple databases and translate coordinates from one database to the other.

ADD COMMENTlink written 2.3 years ago by lait150
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1003 users visited in the last hour