Question: How can i get gene name instead of gene ID from prepDE.py after STRINGtie?
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gravatar for k.kathirvel93
8 days ago by
India
k.kathirvel9370 wrote:

Hi EveryOne,

I am trying STRINGtie for RNA-seq mRNA quantification after mapping with hisat2. STRINGtie can't produce gene raw counts, so i have used prepDE.py script to obtain gene counts. But, here i am getting only ensembl ID. I want gene name instead of ID. Any solution ? Thanks in advance.

rna-seq next-gen gene • 84 views
ADD COMMENTlink written 8 days ago by k.kathirvel9370

Can you add the command you ran along with a few lines from the input GTF files ?

ADD REPLYlink written 8 days ago by Vijay Lakhujani3.0k
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