Question: How can i get gene name instead of gene ID from after STRINGtie?
gravatar for k.kathirvel93
8 days ago by
k.kathirvel9370 wrote:

Hi EveryOne,

I am trying STRINGtie for RNA-seq mRNA quantification after mapping with hisat2. STRINGtie can't produce gene raw counts, so i have used script to obtain gene counts. But, here i am getting only ensembl ID. I want gene name instead of ID. Any solution ? Thanks in advance.

rna-seq next-gen gene • 84 views
ADD COMMENTlink written 8 days ago by k.kathirvel9370

Can you add the command you ran along with a few lines from the input GTF files ?

ADD REPLYlink written 8 days ago by Vijay Lakhujani3.0k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 664 users visited in the last hour