Question: Prokaryotic protein binding motifs databases
0
gravatar for Andrew Sonin
9 weeks ago by
Russia, Moscow, MIPT
Andrew Sonin0 wrote:

Hello.

I'm researching the promoters of bacterial and archean operons, and I would like to ask what data bases of DNA-binding motifs of prokaryotic regulatory proteins exist today?

Thank you in advance for any information.

ADD COMMENTlink modified 9 weeks ago by manuel.belmadani60 • written 9 weeks ago by Andrew Sonin0
0
gravatar for manuel.belmadani
9 weeks ago by
Canada
manuel.belmadani60 wrote:

The MEME suite provides some prokaryotic databases of different sources: http://meme-suite.org/db/motifs

You can download them here: http://meme-suite.org/doc/download.html?man_type=web

You can either follow the description back to the source database, or use those since they're in MEME format, meaning they're readily usable with other tools in the MEME suite. For example, TOMTOM can take a predicted motif (IUPAC nucleotide, or a PSWM) and will align it to the entire motif set from the specified MEME format database(s), giving you p-value/E-values based on how strongly/distinctively your motif matches existing entries in the database(s).

ADD COMMENTlink modified 9 weeks ago • written 9 weeks ago by manuel.belmadani60
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1221 users visited in the last hour