Question: Estimating the purity of tumor cells in gene expression microarray data
gravatar for Shamim Sarhadi
7 months ago by
Shamim Sarhadi210 wrote:

Hi Is there any tool for defining the tumor cell purity in gene expression microarray data?

Thanks in advance

microarray cell purity • 272 views
ADD COMMENTlink modified 7 months ago • written 7 months ago by Shamim Sarhadi210

Have you searched the World Wide Web? There appears to be solutions for methylation arrays.

ADD REPLYlink written 7 months ago by Kevin Blighe39k

You might need to clarify what kind of array that you are talking about. Like methylation, expression, or SNP chip.

ADD REPLYlink written 7 months ago by btsui290
gravatar for dariober
7 months ago by
WCIP | Glasgow | UK
dariober9.9k wrote:

Hi- If it's genotyping arrays you are referring to, then you could try ASCAT. ASCAT is designed to detect copy number variants and it gives, in addition, the purity estimate.

ADD COMMENTlink written 7 months ago by dariober9.9k
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