Question: Estimating the purity of tumor cells in gene expression microarray data
gravatar for Shamim Sarhadi
19 months ago by
Shamim Sarhadi210 wrote:

Hi Is there any tool for defining the tumor cell purity in gene expression microarray data?

Thanks in advance

microarray cell purity • 525 views
ADD COMMENTlink modified 19 months ago • written 19 months ago by Shamim Sarhadi210

Have you searched the World Wide Web? There appears to be solutions for methylation arrays.

ADD REPLYlink written 19 months ago by Kevin Blighe56k

You might need to clarify what kind of array that you are talking about. Like methylation, expression, or SNP chip.

ADD REPLYlink written 19 months ago by btsui290
gravatar for dariober
19 months ago by
WCIP | Glasgow | UK
dariober11k wrote:

Hi- If it's genotyping arrays you are referring to, then you could try ASCAT. ASCAT is designed to detect copy number variants and it gives, in addition, the purity estimate.

ADD COMMENTlink written 19 months ago by dariober11k
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