samtools error #E27

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5.7 years ago

michael • 0

I use samtools only to extract the associated SAM file from BAMs I get from FTDNA. I've been doing this for about three years and have had no problem until the last couple of files received over the last two days. When running ...

samtools view -F 4 $file.bam chrY > $file.sam

I get this error:

E27: Farsi cannot be used: Not enabled at compile time.

Any ideas? I've confirmed that I have the latest release.

Thanks, Michael

samtools • 1.7k views

ADD COMMENT • link updated 5.7 years ago by Ram 43k • written 5.7 years ago by michael • 0

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It's likely that samtools isn't installed correctly and you're actually running view, which is somehow triggering vim (that's a gvim error that you're seeing).

ADD REPLY • link 5.7 years ago by Devon Ryan 104k

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This should be a question, not a tool type post. Please read the descriptions when you create a post. Also, please use relevant tags.Your question was about samtools, that should have been a tag. Also, please use the use the formatting bar (especially the code option) to present your post better. I've done it for you this time.
code_formatting

ADD REPLY • link 5.7 years ago by Ram 43k

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