Question: Where to find WGCNA tutorials?
0
gravatar for BioNetwork
19 months ago by
BioNetwork0
BioNetwork0 wrote:

I would like to use the WGCNA package but the tutorials are gone (http://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/) and I cannot find any free tutorial that explains how to execute their main analysis pipelines.

coexpression network wgcna • 3.2k views
ADD COMMENTlink modified 19 months ago by Kevin Blighe56k • written 19 months ago by BioNetwork0

I found this: https://hms-dbmi.github.io/scw/WGCNA.html but it is not comprehensive enough.

ADD REPLYlink written 19 months ago by BioNetwork0

I think this is the new link to the old tutorials, could someone confirm? https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Book/

ADD REPLYlink written 19 months ago by BioNetwork0

Hi, Thank you! But it seems that it need at least 15 samples, if I only have 7 timepoint, 2 replicate for wach time point, if I can still use WGCNA....

ADD REPLYlink written 9 months ago by mxlsherry199230
4
gravatar for Kevin Blighe
19 months ago by
Kevin Blighe56k
Kevin Blighe56k wrote:

The new location is here:

It seems to have been moved within the last few days (time of writing: August 22, 2018).

Kevin

ADD COMMENTlink written 19 months ago by Kevin Blighe56k

Hi, Thank you! But it seems that it need at least 15 samples, if I only have 7 timepoint, 2 replicate for wach time point, if I can still use WGCNA...

ADD REPLYlink written 9 months ago by mxlsherry199230

With 2 replicates per time-point, your set-up is not great. Why only 2? It will be very difficult to publish that in any reputable journal.

ADD REPLYlink written 9 months ago by Kevin Blighe56k
1

Hi, thanks for reply, we didn't aim to do WGCNA at first, but just think about if it could be done or as a reference for results:)

ADD REPLYlink written 8 months ago by mxlsherry199230
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