my question is somehow related to some previous questions asked here: ( http://biostar.stackexchange.com/questions/788 , http://biostar.stackexchange.com/questions/31, http://biostar.stackexchange.com/questions/613 , etc...).
I'm looking for a table that would summarize the pro's and the con's of each tool for NGS (mappers and/or snp callers), the algorithm used, if the quality of the fastq, is taken into account, how the gaps & the indels are handled, a publication, etc... ... e.g.: something that would look like the following (almost empty) page on wikipedia: http://en.wikipedia.org/wiki/List_of_sequence_alignment_software#Short-Read_Sequence_Alignment
UPDATE: @Julien_f suggested this link: http://lh3lh3.users.sourceforge.net/NGSalign.shtml
Update2: another cool resource cited in Marc's paper: http://seqanswers.com/wiki/Software/list