SNPS representation in a genome related to refernce

Question

[uzmanadiiim]

Hi threr would anyone please suggest is this possible to represent SNPs in a genome related to reference genome using a brig> I have ran snippy on my GBS strains but now want to generate a snp figure somewhat like attached below. Please help which software should I use I tried downloading SYNTview but the installation file is corrupted and it asked me to contact author which I already did but no response yet. SNP calls from HiSeq reads of TY2482

Thanks in advance

Answer 1

[h.mon]

You can use Artemis + DNAPlotter to draw this kind of figure.