Taxa lists from Human Microbiome Project?
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3.1 years ago
gtrwst9 • 0

Has anyone attempted to generate a list of taxa (at spec. body site), even without abundancies? This should be possible with the WGS part of the data, as 16S is too error prone.

I would be very interested in having a list of the skin, esp. of the back. But a complete (as in all sites) list would be fine too.

HMP metagenomic • 520 views
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3.1 years ago
gtrwst9 • 0

Found it. This page lists the datasets grouped according to body sites: https://www.hmpdacc.org/hmp/HMASM/

and on this page: https://www.hmpdacc.org/hmp/HMSCP/ you can then download the abundance tables. Unfortunately skin sites are only one, the retroauricular. So my problem remains, although the question is answered.

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