Question: data download for strandalone blast
0
gravatar for ps1470672
9 months ago by
ps14706720
ps14706720 wrote:

how to download protein data of bacteria for strand alone blast from ncbi ftp site

gene • 200 views
ADD COMMENTlink modified 9 months ago by finswimmer11k • written 9 months ago by ps14706720
1

And what is your question?

ADD REPLYlink written 9 months ago by finswimmer11k
1

Since there is no strandalone blast you probably meant to say standalone blast. Please edit the title/post to correct that.

ADD REPLYlink modified 9 months ago • written 9 months ago by genomax68k

The easiest way to do this would be to download protein sequences in FASTA format for the current release and then format them into BLAST databases using makeblastdb.

FASTA files can be downloaded using the following command:

wget ftp://ftp.ncbi.nlm.nih.gov/refseq/release/bacteria/bacteria.nonredundant_protein.*.protein.faa.gz
ADD REPLYlink written 9 months ago by Sej Modha4.2k
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