Question: How to make this specific "pileup" like plot?
0
gravatar for vivekraiiitkgp
15 months ago by
India
vivekraiiitkgp50 wrote:

Hi,

I came across this plot in the paper (2) that I'd like to know how to make. I have tried a couple of options, mainly through ggplot2, but none seem to yield an equivalent version --- specially the track at the bottom that appears to come from a binarized single-cell count matrix.

enter image description here

ggplot2 R single-cell • 450 views
ADD COMMENTlink modified 15 months ago • written 15 months ago by vivekraiiitkgp50

Why not contact the author directly? https://profiles.ucsd.edu/sebastian.preissl

ADD REPLYlink written 15 months ago by e.benn110

I have.. though thought this will be faster..

ADD REPLYlink written 15 months ago by vivekraiiitkgp50

You can try, but this group probably gets a lot of mail correspondance and will likely ignore questions about how to make a figure.

ADD REPLYlink written 15 months ago by ATpoint26k

have you looked at Gviz?

ADD REPLYlink written 15 months ago by Russ460

I think this is simply a screenshot from the IGV browser, plus some custom things like the box and size scale and legend. Can do this with Inkscape.

ADD REPLYlink written 15 months ago by ATpoint26k
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