I have two genome assemblies created using different platforms for same species. I am doing some post analysis to check the performance of assemblers. For this, I have the following:
- Contig files (multi-fasta) for reference (910 MB) and query (510 MB)
- Blast hits (tabular format) for reference vs query.
Here, I would like to make a circular track for Reference genome and see how the hits of query assembly distribute. Please suggest the possible methods to do it. I looked for UCSC genome browser, where it displays alignment for pre-defined set of organism. My organism is not in their list.
Thanks in Advance.