Question: Cant find bowtie index files
2.2 years ago by
nivya.james2016 • 0
nivya.james2016 • 0 wrote:
I am new to NGS analysis. I am trying to attempt miRNA Seq analysis. But i have come across this problem. Could anyone help me? Thanks in advance.
mapper.pl trim_3_SRR7189569.fastq -e -j -k TCGTATGCCGTCTTCTGCTTGT -l 18 -m -p /home/nivya/Desktop/NSCLC/miRNASeq/genome/genome -s reads_collapsed.fa -t reads_collapsed_vs_genome.arf -v -n -h parsing fastq to fasta format discarding sequences with non-canonical letters clipping 3' adapters discarding short reads collapsing reads mapping reads to genome index Could not locate a Bowtie index corresponding to basename "/home/nivya/Desktop/NSCLC/miRNASeq/genome/genome" Please make sure you used bowtie version 1 to build the index. Usual index files have suffix .ebwt
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