Dear group, I apologize if I am asking a question that has been discussed here. I could not find a related search to my question.
I am interested in running analyses on TCGA raw data on cloud that hosts raw data already. I have necessary permissions to access raw TCGA data. What I am looking into is 1. access raw TCGA FASTQ files from multiple organ sites, align to a genome of my selection. 2. Using BAM files, I analyze data to obtain results that are required for further downstream analyses. 3. Cloud should provide tools (STAR, BWA, Tophat etc. ) I don't want to install and configure. Looking for analysis ready cloud space.
Are there available. I read about sevenbridges, Broad, NCI-GDC cloud and google-SIB etc. It is confusing to know which service would match based on my requirements.
Appreciate your input, suggestions.