Question: Augustus Gene Frequency and Gene Names (Using BRAKER Pipeline)
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gravatar for isu2017
8 months ago by
isu20170
isu20170 wrote:

Hi everyone,

I recently finished running the braker pipeline on a previously unannotated organism. The pipeline just finished, with the final GTF file from Augustus being produced. However, the total amount of genes in his the file are much larger than what we expected (close to 100,000 were predicted.) Additionally, each gene is labeled as "gene1", "gene2", ect. So, my questions are:

1.) How can I reduce the redundancy in the amount of predicted genes. 2.) How can I annotate the genes and retrieve gene names

Thanks!

ADD COMMENTlink modified 8 months ago • written 8 months ago by isu20170
0
gravatar for isu2017
8 months ago by
isu20170
isu20170 wrote:

Any ideas would be greatly appreciative!

ADD COMMENTlink written 8 months ago by isu20170
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