I'm trying to make an assembly of several sequences with next command but I have an error
sample1_1.fq sample1_2.fq sample2_1.fq sample2_2.fq
for i in *.fq ; do /home/fernado/megahit/megahit -1 $i\_1.fq -2 $i\_2.fq -o assembly$i ; done
16Gb memory in total.
Cannot find file assembly_sample1_1.fq_1.fq
I hope you can help