pacbio-illumina hybrid assemblies
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3.7 years ago

We are looking into assembly with pacbio and illumina data, and wondering if there are any tools or well-validated workflows for hybrid assemblies, as well as any recommendations for coverage. this is for a eukaryotic genome. additionally, has anyone ever tried a pacbio-10XGenomics hybrid assembly?

assembly illumina pacbio hybrid assembly • 2.1k views
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2.9 years ago

This guy seems to be trying it with quickmerge.

https://github.com/mahulchak/quickmerge/issues/22

It would be good to use the advantage of the 10x supernova assemblies and not just feed them as simple illumina data to another assembler...

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