Question: MCScanX empty collinearity file.
5 months ago by
1234anjalianjali1234 • 30
1234anjalianjali1234 • 30 wrote:
I want to check the gene duplication of a gene within Potato genome for which I am using MCScanX.
OUTPUT is showing that there is no alingment generated:
Reading BLAST file and pre-processing Generating BLAST list 1446 matches imported (1155 discarded) 48 pairwise comparisons 0 alignments generated Pairwise collinear blocks written to /home/xyz.collinearity [0.389 seconds elapsed] Tandem pairs written to /home/xyz.tandem Writing multiple syntenic blocks to HTML files st00.html st1.html st10.html st11.html st12.html st2.html st3.html st4.html st5.html st6.html st7.html st8.html st9.html Done! [0.166 seconds elapsed]
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