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• imputation methode applied to SNP
  hello, I need help with SNP imputation which algorithm is used for this? I need to explain the im...
• Imputation Without A Reference Panel
  I would like to know if there are there any tools to impute missing SNPs for a resequencing datas...
• How Can I Compute The R Square Hat Statistic For Imputed Data?
  Hi, I have imputed a large dataset with mach / minimac and that resulted in 9 TB of data. The ne...
• how to obtain imputation accuracy - allelic R2 in beagle
  Dear All, I used beagle for imputation but I could not see the allelic Rsquare (AR2) which measur...
• General approach for genotype refinement after GATK processing?
  Hi guys, Very new to all this so please bare with me. I just finished running through GATK's be...
• Problem in merging 1000G and cases in Plink
  I have some problems in stating the imputation. I am PhD student and I work on imputation in case...
• How to get imputation accuracy/quality after using IMPUTE2?
  I know I might be missing something obvious, but how do I get the accuracy/quality of my imputati...
• MACH imputation result QC
  For eqtl analysis, I used mach admix to imputed SNP6 array data against 1000G.  Then the next ste...
• How to calculate Imputation Accuracy Estimates like concordance with BEAGLE?
  Hi all, I have an imputed file output from BEAGLE [IMPUTED FILE][1] Rows are SNP's and columns a...
• Is Imputation Compulsory For Association Study?
  is imputation compulsory for association studies? My results are completely different in before...
• Which experiment group is an imputed SNP associated with?
  When conducting a GWAS, how do you interpret if an imputed SNP with a significant p-value and r2 ...
• Imputing specific SNPs and merging with original dataset
  I have a query about imputing specific SNPs in genotyping data. I have a small dataset in Plink f...
• How can I analyze the data provided by Michigan Imputation server using ProbABEL?
  Hello! I'm very new to GWAS and I'm performing imputation for the first time. Please help me out...
• Is there a FASTA file containing 1000 Genomes variant information to check reference alleles in VCF files?
  Hi folks! I've imputed genotype data using the Michigan Imputation Server (MIS), using the 1000 ...
• Missing value imputation for beta values of Methylation data
  I have download the beta values for methylation data form GEO on different sample. Values form di...
• Sanger Imputation Service - The input file sanity check failed
  Dear all, I would like to impute a genotype dataset using the Sanger Imputation Service. I creat...
• How To Convert Snp Genotype Data Into 0,1,2 Matrix
  Hi, all Here propose the questions of how to convert the raw genotype data into a matrix filled...
• Does it make sense to perform Genotype Imputation using variants called from WES?
  Hi Biostars: I have genotype data called from Whole Exon Sequencing, which contains 0.12 million...
• Imputation 1000 Genome and plink file
  Hi, I'm a new entry in "imputation's world". I downloaded impute2 and I read the examples. I've ...