Question: Map plasmodb gene ID to pdb crystal structure if exist
0
gravatar for db4
18 months ago by
db410
db410 wrote:

I have a list of genes with their Plasmodb ids. I want to map the genes to their corresponding protein structures if it exists in the PDB. So far I have tried two different strategies: Using NCBI etulils to find the gene id in NCBI, then the related protein ID and finally the related structure(s) IDs. Through Plasmodb, "blasting" each gene against pdb structures. The results I am getting are not consistent in the two strategies.

structure plasmodb id pdb gene • 379 views
ADD COMMENTlink modified 16 months ago by Biostar ♦♦ 20 • written 18 months ago by db410

I'd suggest sticking to PlasmoDB results as it is regularly updated and maintained by a dedicated team of the software developers. It is highly likely that genome sequences and annotations on NCBI may not be as updated as PlasmoDB.

ADD REPLYlink modified 18 months ago • written 18 months ago by Sej Modha4.6k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1019 users visited in the last hour