Hi there, I am trying to do some normalization before starting with the assembling. I am using in silico normalization. I have been looking at the manual and I have figure out the command for two paired data:
--seqType fq --JM 1G --max_cov 50 --left /PATH/s21_1.fq --right /PATH/s21_2.fq \
--pairs_together --output /PATH/insil_norm_ex
This command works but I have more data (s22_1.fq, s22_2.fq, s23_1.fq, s24_2.q....etc) I have seen that there is an option for these kind of things (--left_list or --righ_list).. The thing is that I don't understand very well what I have to do...do I need to create a file (.txt) with all the names for s.1.fq (left) and another one for s.2.fq (right) and then specify the PATH for each file in the command?