Question: Error while using TCGAanalyze_DMR for >2 groups
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gravatar for mtkk94
10 months ago by
mtkk9410
mtkk9410 wrote:

Hello,

I'm trying to use TCGAanalyze_DMR for 2 groups (Indolent vs Aggressive). I have the below error.

https://user-images.githubusercontent.com/41593805/45496569-5f9edb80-b73b-11e8-8484-51ce3a2e01a3.png

What could be the reason for this error? Is it cause some of the values are NAs? but it saved the below histogram. https://user-images.githubusercontent.com/41593805/45496588-6af20700-b73b-11e8-92aa-30cfedc11a91.png

My code:

https://user-images.githubusercontent.com/41593805/45496611-75ac9c00-b73b-11e8-8da9-f818a35aafcf.png

It works well if I use only one in groups (see below)

https://user-images.githubusercontent.com/41593805/45496704-a7bdfe00-b73b-11e8-8331-dd6d1864c0fd.png

Please help.

Thank you, Tarun Mamidi

ADD COMMENTlink written 10 months ago by mtkk9410

You may want to post on the Bioconductor Support Site, where the TCGA Biolinks developer is more active.

ADD REPLYlink modified 10 months ago • written 10 months ago by Kevin Blighe45k
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