Tool or package to make a plot of multiple species GO comparison
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3.1 years ago

I wanted to plot GO enrichment results of multiple species (10) to compare the enriched terms. Can anyone suggest tool or package for my purpose? An example of the desired plot is below.

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Gene ontology package GO VISUALIZATION TOOL • 1.3k views
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2.7 years ago
matz • 0

I have an R package called KOGMWU (available from CRAN), it is based on KOG annotations and is designed for multi-species comparisons of broad functional responses. The instructions are in the code example listed in the package. The example paper that uses it is this: https://matzlab.weebly.com/uploads/7/6/2/2/76229469/dixon15-science.pdf , and also this one (shows that red coral larvae are similar to overwintering insect) - https://matzlab.weebly.com/uploads/7/6/2/2/76229469/strader16_diapause.pdf . You can get KOG annotations from eggnog-mapper (see here how to reformat results: https://github.com/z0on/emapper_to_GOMWU_KOGMWU ) - Misha

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