Question: how can I convert the gff3 file into EMBL format??
1
gravatar for Jerryliu
6 months ago by
Jerryliu10
Jerryliu10 wrote:

Hi! A sequence alignment software I use requires me to hand in the gene annotation file in EMBL format, but I only have the file in gff3 format. Do anyone know how can I convert the file in gff3 format into EMBL format??? really need some help...

gene genome • 253 views
ADD COMMENTlink modified 6 months ago by lieven.sterck4.2k • written 6 months ago by Jerryliu10
1
gravatar for lieven.sterck
6 months ago by
lieven.sterck4.2k
VIB, Ghent, Belgium
lieven.sterck4.2k wrote:

you might give this one a try: EMBLYmyGFF3

ADD COMMENTlink written 6 months ago by lieven.sterck4.2k

Yes you can definitely create EMBL-like file with EMBLmyGFF3. I say EMBL-like because your file will not contain some information that are uniquely provided by the ENA database when you perform a submission (i-e: locus_tag, project number, sequence identifier). I guess those information are useless for your purpose, so by providing fake information (or leting by default those that can be) to EMBLmyGFF3 you should succeed to do the job.

ADD REPLYlink written 6 months ago by Juke-342.0k
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