Entering edit mode
5.6 years ago
biopat
•
0
Hi,
I was running goanna and kegga in R:
kegga.de=kegga(lrt, species="Mm")
go <- goana(lrt, species= 'Mm')
topGO(go, n=50)
For both the output is a list of pathways that show a number of uregulated, downregulated, or unchanged genes. See below:
Is there any simple way to visualize which of the genes are actually up or down in these pathways? I have previously used the Desktop version of GSEA by the Broad Institute, which allows nice visualization of these things.
Thank you!