Off topic:Can I visualize individual genes of pathways when running goanna or kegga?
0
0
Entering edit mode
5.6 years ago
biopat • 0

Hi,

I was running goanna and kegga in R:

kegga.de=kegga(lrt, species="Mm")
go <- goana(lrt, species= 'Mm')
topGO(go, n=50)

For both the output is a list of pathways that show a number of uregulated, downregulated, or unchanged genes. See below:

goana result

Is there any simple way to visualize which of the genes are actually up or down in these pathways? I have previously used the Desktop version of GSEA by the Broad Institute, which allows nice visualization of these things.

Thank you!

R RNA-Seq • 1.4k views
ADD COMMENT
This thread is not open. No new answers may be added
Traffic: 1706 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6