How can I search for the location of effector proteins on genomes
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2.9 years ago
kamel ▴ 30

Dear colleagues,

I assembled and annotated 6 genomes of Fungi (Corynespora cassiicola). my goal was to look for the effectors and localization of these genes on the 6 genomes, I made blastp of my proteomes on the databases of effectors (like cazymes and cyp450). my question is how can I look for localization of these effectors on my 6 genomes to see if these effectors are in the same positions on the 6 genomes or not? I hope my question is clear. Pending your answers.

Thank you in advance

genome sequence localization alignment proteomes • 388 views
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