Can I visualize individual genes of pathways when running goanna or kegga?

Question

[biopat]

Hi,

I was running kegga and goana as follows:

> kegga.de=kegga(lrt, species="Mm")

> go <- goana(lrt, species= 'Mm')
> v <- topGO(go, n=100)

For both, the output is a list of pathways that show a number of upregulated, downregulated, or unchanged genes. See below:

Is there any simple way to visualize which of the genes are actually up or down in these pathways? I have previously used the Desktop version of GSEA by the Broad Institute, which allows nice visualization of these things.

Thank you!

[biopat]

The

> v <- topGO(go, n=100)

was actually in run in the next line not as displayed here

[GenoMax]

Please use the formatting bar (especially the code option) to present your post better. I've done it for you this time.

Thank you!