Question: Download sequences from Bioproject
0
gravatar for JC
11 months ago by
JC0
JC0 wrote:

Hello everyone,

I am trying to download the mRNA sequences from the following link:

https://www.ncbi.nlm.nih.gov/bioproject/81581

However, I tried to search information about how to do it but it was useless. Could somebody give my some information about how do this?

Thank you to everyone.

JC

rna-seq • 1.1k views
ADD COMMENTlink modified 11 months ago by Bastien Hervé4.4k • written 11 months ago by JC0
2
gravatar for Sej Modha
11 months ago by
Sej Modha4.2k
Glasgow, UK
Sej Modha4.2k wrote:

You can use NCBI UNIX utils to download data in the fasta format.

esearch -db bioproject -query 81581 |elink -target nuccore|efetch -format fasta
ADD COMMENTlink written 11 months ago by Sej Modha4.2k
1
gravatar for Bastien Hervé
11 months ago by
Bastien Hervé4.4k
Limoges, CBRS, France
Bastien Hervé4.4k wrote:

Under "Projet Data", in the table click on 1 on the line "SRA Experiments".

On the next page in the table "Runs" click on SRR400672.

In this new page, you can have a look at all your reads, in the Reads tab

Instructions to download your reads are under the Download tab

ADD COMMENTlink modified 11 months ago • written 11 months ago by Bastien Hervé4.4k
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