Entering edit mode
5.6 years ago
DVA
▴
630
Hello,
I wonder how to use a bam file to learn how many sites are not covered at all, how many are covered >=5 times and 20 times. We got such stats from our sequencing company, but want to see we can do it ourselves as well.
Thank you very much.
Are you looking to get the stats at individual base level or a interval window?
Thank you for the comment @genomax, I am looking at individual base level.