Question: Error in superfocus annotation
0
gravatar for fernandoavila3428
6 months ago by
fernandoavila34280 wrote:

hello community I am using super focus for functional assignment of metagenomes, however, every time I run it, this error comes out, what could it be? Or you know another tool for functional assignment

terminate called after throwing an instance of 
'boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::bad_lexical_cast> >'
what():  bad lexical cast: source type value could not be interpreted as target
 Aborted (core dumped)
 [2018-09-25 23:49:30,215 - INFO]    Parsing Alignments
  Traceback (most recent call last):
  File "/home/fernado/miniconda3/bin/superfocus", line 11, in <module>
sys.exit(main())
 File "/home/fernado/miniconda3/lib/python3.6/site-packages/superfocus_app/superfocus.py", line 322, in main
  minimum_identity, minimum_alignment, subsystems_translation, aligner)
 File "/home/fernado/miniconda3/lib/python3.6/site-packages/superfocus_app/do_alignment.py", line 171, in 
 parse_alignments
 update_results(results, sample_index, temp_results, normalise, number_sample

I hope you can help me

best

sequencing • 227 views
ADD COMMENTlink modified 6 months ago by WouterDeCoster38k • written 6 months ago by fernandoavila34280

Please post the full command line when asking these kind of questions.

ADD REPLYlink written 6 months ago by ATpoint15k

There is no need to SHOUT. I have adapted your title and removed the CAPS. In addition, please select sensible tags for your question, as such experts can easily find your question and help you. In this case "superfocus" should have been there.

ADD REPLYlink written 6 months ago by WouterDeCoster38k
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