GO enrichment analysis for a set of gene list and creation of network model for these gene list on the basis of their GO functions using Script program

Question

[princy149]

Hi everyone, I want to do "GO enrichment analysis for a set of gene list and creation of network model for these gene list on the basis of their GO functions using Script program" also can we get KEGG id, Panther ID, Pfam id and their functional descriptions in a one program or script?

so anyone have idea about this.

Answer 1

[Kevin Blighe]

If you are new to bioinformatics, then you may use DAVID (Database for Annotation, Visualization and Integrated Discovery), in particular, the Functional Annotation Clustering tool.

If you are okay programming in R, then topGO and KEGGprofiler could work, for GO terms and KEGG pathways at least.

Network analysis in relation to already-curated pathways is a work in progress.

Kevin