Plink command to find tag SNP for DRB1*01, DRB1*04, and DRB1*10

Question

[Shicheng Guo]

Hi All,

Any suggestion to Plink command to find tag SNP for DRB1*01, DRB1*04, and DRB1*10

Thanks.

Answer 1

[princy149]

you can use something like this, make your DRB101, DRB104, and DRB1*10 as phenotype data.

C:\usr\bin\plink1.09>plink.exe --bed    "C:\usr\.....data.bed"  --bim "C:\users\.....data.bim" --allow-extra-chr --fam "C:\users\data.fam"  --pheno "C:\Users\...your data.phe" --missing-phenotype -999 --allow-no-sex  --show-tags "C:\users\...output.txt

also see some examples as this link:

Question: Tagging SNPs in PLINK