Question: Remove Sequences from existing Bowtie2 index
gravatar for cvu
12 months ago by
cvu140 wrote:

Hello All,

I've created a bowtie2 large index, Which is a huge data set (~100GB) it took approx 2days to generate a bowtie2 index. Now I came across problems with some sequences and I want to remove it from my existing index.

Is there a way to remove sequences based on their identifiers directly from the index so that I can save indexing time.

Any help would be appreciated!!

Thank you in advance !!

index ngs bowtie2 genome • 294 views
ADD COMMENTlink modified 12 months ago • written 12 months ago by cvu140

Highly likely there is no way and the only way to solve this would be to repeat the indexing.

ADD REPLYlink written 12 months ago by WouterDeCoster41k
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