from which database givesTissue specific promoter motifs
0
0
Entering edit mode
5.6 years ago

I want to create Tissue specific promoter motifs , it should be look likes in the below format:

chro no start end orientation motif pvalue ..etc.'0' indicates the motif is absent in the tissue
i am new to biological databases from where i get the (promoter motifs details tissue specific details)

chrY    12883   12897   -   CCACCAGAGGGCCT  4.4989e-06  517 0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0
sequence alignment • 829 views
ADD COMMENT
0
Entering edit mode

All tissues share the same DNA, so the same motifs are present. What exactly do you mean with tissue specific?

ADD REPLY
0
Entering edit mode

More details are needed. From where (which software or database) did you get this line ? What is the complete header of this line ? What do you really want in details ?

ADD REPLY
0
Entering edit mode

actually i want to study the TF binding specificity, whether its surrounding plays a role or not? its from MEME i guess, but i tried to recreate the same but i fail, There is no header at all, I put header on it.

ADD REPLY

Login before adding your answer.

Traffic: 2652 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6