Question: MetaboAnalyst Install problems?
0
gravatar for BeetleCheers
6 months ago by
Canada, UNBC
BeetleCheers0 wrote:

Hi there,

Does anyone have experience installing MetaboAnalystR on Windows 7? I am trying to install the package and I keep getting strange errors:

devtools::install_github("xia-lab/MetaboAnalystR", build_vignettes=TRUE)
Downloading GitHub repo xia-lab/MetaboAnalystR@master
from URL https://api.github.com/repos/xia-lab/MetaboAnalystR/zipball/master
Installing MetaboAnalystR



ERROR: dependencies 'impute', 'pcaMethods', 'globaltest', 'GlobalAncova', 'Rgraphviz', 'preprocessCore', 'genefilter', 'SSPA', 'sva', 'limma', 'KEGGgraph', 'siggenes' are not available for package 'MetaboAnalystR'
* removing 'C:/Users/user/Documents/R/win-library/3.4/MetaboAnalystR'
In R CMD INSTALL
Installation failed: Command failed (1)
ADD COMMENTlink modified 6 months ago by zx87547.1k • written 6 months ago by BeetleCheers0

Try:

devtools::install_github("xia-lab/MetaboAnalystR", build_vignettes = TRUE, dependencies = TRUE)
ADD REPLYlink modified 6 months ago • written 6 months ago by zx87547.1k
0
gravatar for Friederike
6 months ago by
Friederike3.8k
United States
Friederike3.8k wrote:

you need to install the dependencies that are listed in the error message, i.e. try to install the packages that named such as impute, pcaMethods etc.

ADD COMMENTlink written 6 months ago by Friederike3.8k
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