Question: MetaboAnalyst Install problems?
0
gravatar for BeetleCheers
12 months ago by
Canada, UNBC
BeetleCheers0 wrote:

Hi there,

Does anyone have experience installing MetaboAnalystR on Windows 7? I am trying to install the package and I keep getting strange errors:

devtools::install_github("xia-lab/MetaboAnalystR", build_vignettes=TRUE)
Downloading GitHub repo xia-lab/MetaboAnalystR@master
from URL https://api.github.com/repos/xia-lab/MetaboAnalystR/zipball/master
Installing MetaboAnalystR



ERROR: dependencies 'impute', 'pcaMethods', 'globaltest', 'GlobalAncova', 'Rgraphviz', 'preprocessCore', 'genefilter', 'SSPA', 'sva', 'limma', 'KEGGgraph', 'siggenes' are not available for package 'MetaboAnalystR'
* removing 'C:/Users/user/Documents/R/win-library/3.4/MetaboAnalystR'
In R CMD INSTALL
Installation failed: Command failed (1)
ADD COMMENTlink modified 12 months ago by zx87548.3k • written 12 months ago by BeetleCheers0

Try:

devtools::install_github("xia-lab/MetaboAnalystR", build_vignettes = TRUE, dependencies = TRUE)
ADD REPLYlink modified 12 months ago • written 12 months ago by zx87548.3k
0
gravatar for Friederike
12 months ago by
Friederike5.2k
United States
Friederike5.2k wrote:

you need to install the dependencies that are listed in the error message, i.e. try to install the packages that named such as impute, pcaMethods etc.

ADD COMMENTlink written 12 months ago by Friederike5.2k
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