I am trying to analyze CEL files for the Clariom D human platform (Clariom_D_Human). Trying to use the ReadAffy function or read.celfiles from oligo, both result in a missing CDF enviroment error.
batch = ReadAffy(filenames = celFiles, phenoData = phenodata)
"missing cdf environment! in show(AffyBatch)"ERROR while rich displaying an object: Error in getCdfInfo(object): Could not obtain CDF environment, problems encountered: Specified environment does not contain clariomdhumanhsgenecodegcdf Library - package clariomdhumanhsgenecodegcdf not installed Bioconductor - clariomdhumanhsgenecodegcdf not available
Of course I haven't found the clariomdhumanhsgenecodegcdf, I've also tried with the argument cdfname = 'pd.clariom.d.human' (in case the platform description would be useful here) but this doesn't work either.
I found a custom CDF package in [http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/21.0.0/genecodeg.asp] but I am unable to properly install it or call it.
How can I install this enviroment?/Load the batch?
Thank you for the help!