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• Tools for visualization of CNVs called by XHMM
  Hi, I have a list of CNVs called using XHMM from exomes. I would like to know the best way to vi...
• From Imputed Snps To Cnvs
  Hello, I try to describe it in more detail. :) I have 300,000 SNP genome wide data (ILM HumanH...
• benchmarking/validation tools for CNVs
  Are there good benchmarking/validation tools for CNVs? By 'benchmarking/validation', I mean, you...
• Best CNV caller for Illumina WGRS data, in order to compare two phenotypes
  I'm new to CNV calling, and I would like to get advice on CNV callers to use. I have 30 Illumina ...
• How to interpret this CNV results
  I have downloaded a CNV file from a public database, and the platform on which the CNVs are calle...
• Tools For Analyzing Copy Number Variation On All-Tumor Exome-Seq Samples
  My exome-seq data all derived from sequencing tumor samples. I am wondering what's the best tool ...
• Ld Between Cnvs And Snps
  Dear all, I don't know whether there have been tools calculating LD between CNVs (detected by th...
• Can I Call Cnvs On All Chromosome With Cnvnator ?
  I'm planing to use CNVnator to call CNVs but my sample has 4 bam files of 20Gb each, where chromo...
• CNVkit reference.cnn .cnr .cns log ratio
  hello, I'm trying to use cnvkit on ion torrent ngs data to detect CNVs. i'm not biologist at all...
• How to get log ratio from cn.mops segplot function
  I have been using cn.mops to call CNVs, and I have been using a useful function 'segplot' which m...
• Does CNVs are genetically inherited?
  I have called CNVs from exomes, in multiple members of distant cousins suffering from same diseas...
• Why copy number variations of TCGA is so high
  I was reading some papers on copy number variations. Some of the papers referred to TCGA website ...
• Copy number profile using VarScan
  Hi I'm using VarScan to call CNVs. I've generated raw, called, adjusted GC content and the segmen...
• Is it possible to asses the significance of CNVs in ADtex like that of Control-FREEC?
  Dear All, I would like to know is there a possibility to asses the significance of CNVs which ar...
• CNV, CNA and SNP calling
  Hello, I have a very basic question because I have never worked with SNPS or CNVs: If I have m...