hi, I have made a pan genome analysis of 6 genomes, the pipeline that I used was:
generate a the .psa file for each file using prodigal:
prodigal -i file.fasta -a file.fsa
after that, I made a list with the name of each file and the name of the file, those were created in a file called pancore.list
content of pancore.list:
file1 file1.fsa
file2 file2.fsa
file3 file3.fsa
file4 file4.fsa
file5 file5.fsa
file6 file6.fsa
with the list (pancore.list) and all the files in the same directory, I generated the pancoreplot analysis as follow:
pancoreplot pancore.list -cpu 4 -keep blastOutPut > pancore.ps
I got many files in the output folder (blastOutPut), I want to know, which of those files are the plot (html, image, pdf, etc etc), or how I generate the plot using the tbl file
thanks so much
