Question: Software to detect snps and indels on pacbio data
0
gravatar for kamel
9 weeks ago by
kamel0
kamel0 wrote:

Dear colleagues,

I want to detect SNPs and Indels on pacbio data (I did the subreads mapping on the reference sequence by minimap). Do you have an idea about the tools that identify variations on pacbio data ???

pacbio snp indels • 211 views
ADD COMMENTlink modified 8 weeks ago • written 9 weeks ago by kamel0

Did you try searching the internet for it? Or google scholar? Like:

https://scholar.google.com/scholar?as_ylo=2017&q=snp+pacbio&hl=en&as_sdt=0,5

Previous similar question:

long reads Pacbio SNP calling

ADD REPLYlink modified 9 weeks ago • written 9 weeks ago by h.mon22k

No information about my question in this post

ADD REPLYlink written 9 weeks ago by kamel0

The link on the bottom contains a link to the GitHub of PacificBiosciences and its toolkit GenomicConsensus, which apparently contains a variant calling module. Please do put in a bit of effort reading the linked posts before replying to a user in such an unmotivated fashion. This might make you appear lazy and does not motivate others to help you any further.

ADD REPLYlink written 8 weeks ago by ATpoint11k
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