Question: Software to detect snps and indels on pacbio data
0
gravatar for kamel
8 months ago by
kamel10
kamel10 wrote:

Dear colleagues,

I want to detect SNPs and Indels on pacbio data (I did the subreads mapping on the reference sequence by minimap). Do you have an idea about the tools that identify variations on pacbio data ???

pacbio snp indels • 441 views
ADD COMMENTlink modified 8 months ago • written 8 months ago by kamel10

Did you try searching the internet for it? Or google scholar? Like:

https://scholar.google.com/scholar?as_ylo=2017&q=snp+pacbio&hl=en&as_sdt=0,5

Previous similar question:

long reads Pacbio SNP calling

ADD REPLYlink modified 8 months ago • written 8 months ago by h.mon26k

No information about my question in this post

ADD REPLYlink written 8 months ago by kamel10

The link on the bottom contains a link to the GitHub of PacificBiosciences and its toolkit GenomicConsensus, which apparently contains a variant calling module. Please do put in a bit of effort reading the linked posts before replying to a user in such an unmotivated fashion. This might make you appear lazy and does not motivate others to help you any further.

ADD REPLYlink written 8 months ago by ATpoint17k
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