Question: Software to detect snps and indels on pacbio data
0
gravatar for kamel
6 days ago by
kamel0
kamel0 wrote:

Dear colleagues,

I want to detect SNPs and Indels on pacbio, but I discovered that GATK was not developed on long reads. what tool could you offer me so that I can detect snps and indels on this type of data (with the command if it is possible).

For information I work on the subreads of 10kb.

pacbio snp indels • 116 views
ADD COMMENTlink modified 6 days ago • written 6 days ago by kamel0

Did you try searching the internet for it? Or google scholar? Like:

https://scholar.google.com/scholar?as_ylo=2017&q=snp+pacbio&hl=en&as_sdt=0,5

Previous similar question:

long reads Pacbio SNP calling

ADD REPLYlink modified 6 days ago • written 6 days ago by h.mon20k

No information about my question in this post

ADD REPLYlink written 5 days ago by kamel0
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