parliament2 structural variant caller error
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5.5 years ago
sunnykevin97 ▴ 980

After pulling the docker image not able to run parliament2, facing an import error how to sort out ? (ImportError: cannot import name _remove_dead_weakref)

docker run dnanexus/parliament2:hgsc -h Traceback (most recent call last): File "/home/dnanexus/parliament2.py", line 3, in import argparse File "/miniconda/lib/python2.7/argparse.py", line 86, in import copy as _copy File "/miniconda/lib/python2.7/copy.py", line 52, in import weakref File "/miniconda/lib/python2.7/weakref.py", line 14, in from _weakref import ( ImportError: cannot import name _remove_dead_weakref

SNP alignment software error • 1.2k views
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This would probably be more appropriate at https://github.com/dnanexus/parliament2

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