16 months ago by
Devon Ryan ♦ 94k
Devon Ryan ♦ 94k wrote:
alignmentSieve --samFlagInclude 2 -b input.bam -o output.bam
You can use multiple threads if you like. Of course this uses pysam, which uses htslib, which is part of samtools, but most tools will use something related to samtools somewhere...it's a standard tool after all.
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