Question: Enrichment platforms for 1000GP exome data
0
gravatar for kuckunniwid
9 weeks ago by
kuckunniwid20
kuckunniwid20 wrote:

Dear all,

I've found a lot of information about different samples and sequencing platforms from 1000GP, however I have not found the list matching between "sample ID -> enrichment platform used for WES sequencing", and this is crucial for me since I need to work only with on-target reads that came from pre-designed regions (in other words, I plan to extract regions specified in .bed files - "consensus" of covered .bed is not suitable for my approach). Can you guide me where can I find such information?

wes data • 125 views
ADD COMMENTlink modified 9 weeks ago • written 9 weeks ago by kuckunniwid20
0
gravatar for Emily_Ensembl
9 weeks ago by
Emily_Ensembl16k
EMBL-EBI
Emily_Ensembl16k wrote:

This spreadsheet contains information about the platforms used in each sample at each stage.

ADD COMMENTlink written 9 weeks ago by Emily_Ensembl16k

thank you a lot. well it seems that I am not smart enough, but can you point me to the name of the spreadsheet / name of the column that contains this information? Of course I've checked this spreadsheet and I still do not see where this information is stored.

ADD REPLYlink written 9 weeks ago by kuckunniwid20
0
gravatar for kuckunniwid
9 weeks ago by
kuckunniwid20
kuckunniwid20 wrote:

The answer is actually here:

http://www.internationalgenome.org/category/exome/

ADD COMMENTlink written 9 weeks ago by kuckunniwid20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 592 users visited in the last hour