Question: Enrichment platforms for 1000GP exome data
0
gravatar for kuckunniwid
4 months ago by
kuckunniwid20
kuckunniwid20 wrote:

Dear all,

I've found a lot of information about different samples and sequencing platforms from 1000GP, however I have not found the list matching between "sample ID -> enrichment platform used for WES sequencing", and this is crucial for me since I need to work only with on-target reads that came from pre-designed regions (in other words, I plan to extract regions specified in .bed files - "consensus" of covered .bed is not suitable for my approach). Can you guide me where can I find such information?

wes data • 167 views
ADD COMMENTlink modified 4 months ago • written 4 months ago by kuckunniwid20
0
gravatar for Emily_Ensembl
4 months ago by
Emily_Ensembl17k
EMBL-EBI
Emily_Ensembl17k wrote:

This spreadsheet contains information about the platforms used in each sample at each stage.

ADD COMMENTlink written 4 months ago by Emily_Ensembl17k

thank you a lot. well it seems that I am not smart enough, but can you point me to the name of the spreadsheet / name of the column that contains this information? Of course I've checked this spreadsheet and I still do not see where this information is stored.

ADD REPLYlink written 4 months ago by kuckunniwid20
0
gravatar for kuckunniwid
4 months ago by
kuckunniwid20
kuckunniwid20 wrote:

The answer is actually here:

http://www.internationalgenome.org/category/exome/

ADD COMMENTlink written 4 months ago by kuckunniwid20
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 689 users visited in the last hour