Entering edit mode
5.5 years ago
kamel
▴
70
Dear colleagues,
I want to detect SNPs and Indels on pacbio data (I did the subreads mapping on the reference sequence by minimap). Do you have an idea about the tools that identify variations on pacbio data ???
Did you try searching the internet for it? Or google scholar? Like:
https://scholar.google.com/scholar?as_ylo=2017&q=snp+pacbio&hl=en&as_sdt=0,5
Previous similar question:
long reads Pacbio SNP calling
No information about my question in this post
The link on the bottom contains a link to the GitHub of PacificBiosciences and its toolkit
GenomicConsensus
, which apparently contains a variant calling module. Please do put in a bit of effort reading the linked posts before replying to a user in such an unmotivated fashion. This might make you appear lazy and does not motivate others to help you any further.