Question: Use sms2 javascript standalone from python
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gravatar for hugocroizer83330
4 days ago by
hugocroizer833300 wrote:

Hello everyone ! I wish to use tools from sms2 but the standalone version is made of javascripts. How can I use those in python ? I'm on linux and only know bash and python basics

sms2 python • 111 views
ADD COMMENTlink modified 4 days ago • written 4 days ago by hugocroizer833300
1

Probably BioPython implements most of the functionalities provided by SMS2, it would be both easier for you to learn BioPython, and saner too.

ADD REPLYlink written 4 days ago by h.mon20k

sms2 http://www.bioinformatics.org/sms2/

The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. It is commonly used by molecular biologists, for teaching, and for program and algorithm testing.

ADD REPLYlink written 4 days ago by Pierre Lindenbaum112k

I don't see the standalone option on the site? (I may be being blind) - unless you mean the offline mirror?

The best you could do to my knowledge would be to write a python invocation wrapper script, but that doesn't really save you any effort.

FWIW, pretty much all of the functionality on that webpage has been recreated in python and other languages natively.

ADD REPLYlink modified 4 days ago • written 4 days ago by jrj.healey7.5k

Thank you for your answers !

ADD REPLYlink written 4 days ago by hugocroizer833300
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