I am hoping to use annovar to annotate some zebrafish genome coordinates, and would like to incorporate snp positions.
I can download reference sequences with the following
retrieve_seq_from_fasta.pl tmp/danRer11_refGene.txt -seqdir tmp/danRer11_seq -format refGene -outfile tmp/danRer11_refGeneMrna.fa
Can anyone tell me the command I need to download an appropriate snp database for zebrafish? The following results in error
annotate_variation.pl -downdb snp129 -buildver danRer11 tmp